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Updated Types for Parsers and Parser Utils #699

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merged 11 commits into from
Jul 13, 2023

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adithyaakrishna
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Description:

This PR updates the types for Parsers and its utility functions

Adithya Krishna added 4 commits July 10, 2023 19:36
Signed-off-by: Adithya Krishna <[email protected]>
Signed-off-by: Adithya Krishna <[email protected]>
Signed-off-by: Adithya Krishna <[email protected]>
Signed-off-by: Adithya Krishna <[email protected]>
@adithyaakrishna adithyaakrishna marked this pull request as draft July 10, 2023 19:56
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Parser Utils is giving a type error, will fix it first thing tomorrow morning :)

Adithya Krishna added 6 commits July 12, 2023 14:35
Signed-off-by: Adithya Krishna <[email protected]>
Signed-off-by: Adithya Krishna <[email protected]>
Signed-off-by: Adithya Krishna <[email protected]>
Signed-off-by: Adithya Krishna <[email protected]>
Signed-off-by: Adithya Krishna <[email protected]>
Signed-off-by: Adithya Krishna <[email protected]>
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codecov bot commented Jul 13, 2023

Codecov Report

Merging #699 (bd4c2d2) into master (bf55021) will increase coverage by 0.05%.
The diff coverage is 97.43%.

@@            Coverage Diff             @@
##           master     #699      +/-   ##
==========================================
+ Coverage   83.01%   83.06%   +0.05%     
==========================================
  Files         141      141              
  Lines       11450    11457       +7     
  Branches     2112     2114       +2     
==========================================
+ Hits         9505     9517      +12     
+ Misses       1613     1609       -4     
+ Partials      332      331       -1     
Impacted Files Coverage Δ
src/parsers/PQR.ts 77.08% <ø> (ø)
src/parsers/PRMTOP.ts 95.04% <ø> (ø)
src/parsers/XYZ.ts 87.93% <ø> (ø)
src/parsers/utils/areConnected.ts 85.00% <ø> (ø)
src/parsers/utils/assignBackboneHBonds.ts 100.00% <ø> (ø)
src/parsers/utils/assignPDBBonds.ts 96.87% <ø> (ø)
src/parsers/utils/atomNameToElem.ts 100.00% <ø> (ø)
src/parsers/utils/getSinglePDB.ts 94.52% <ø> (ø)
src/parsers/utils/isEmpty.ts 100.00% <ø> (ø)
src/parsers/utils/validateBonds.ts 100.00% <ø> (ø)
... and 16 more

... and 4 files with indirect coverage changes

@adithyaakrishna adithyaakrishna marked this pull request as ready for review July 13, 2023 08:20
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@dkoes Tests Passed 🎉

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@dkoes dkoes left a comment

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Put documentation back in.

src/parsers/PQR.ts Show resolved Hide resolved
src/parsers/PRMTOP.ts Show resolved Hide resolved
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adithyaakrishna commented Jul 13, 2023

@dkoes My bad, Thank you for pointing them out :)
I had missed reverting those changes back. I have updated the docs with the above commit

Signed-off-by: Adithya Krishna <[email protected]>
@dkoes dkoes merged commit 20b6257 into 3dmol:master Jul 13, 2023
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2 participants